Protein Details: Gamma-aminobutyric acid receptor subunit alpha-5

Protein ID

ICDB_Pro_1214

Protein Name

Gamma-aminobutyric acid receptor subunit alpha-5

Gene Name

Gabra5

Organism

Mus musculus (Mouse)

Length

463 amino acids

AlphaFoldDB

AF-Q8BHJ7-F1-model_v4.pdb

Function

Alpha subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA); a major inhibitory neurotransmitter in the brain. GABA-gated chloride channels; also named GABA(A) receptors (GABAAR); consist of five subunits arranged around a central pore and contain GABA active binding site(s) located at the alpha and beta subunit interface(s) (By similarity). When activated by GABA; GABAARs selectively allow the flow of chloride anions across the cell membrane down their electrochemical gradient (By similarity). GABAARs containing alpha-5/GABRA5 are mainly extrasynaptic and contribute to the tonic GABAergic inhibition of the hippocampus. Extrasynaptic alpha-5-containing GABAARs in CA1 pyramidal neurons play a role in learning and memory processes.

Sequence

MDNGMLSRFIMTQTLLVFCISMTLSSHFGFSQMPTSSVQDETNDNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGSTKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKERELILNKSTNAFTTGKLTHPPNIPKEQPPAGTANAPTVSIKASEEKTAESKKTYNSISKIDKMSRIVFPILFGTFNLVYWATYLNREPVIKGATSPK

PDB Structures

Ligand Binding

1. DICL_CP

2. DICL_Pep

Binding Site

BINDING 101; /ligand="4-aminobutanoate": "ligand shared with the neighboring beta subunit GABRB3"; BINDING 164; /ligand="4-aminobutanoate": "ligand shared with the neighboring beta subunit GABRB3"

Disease

Location

Expressed in brain; in hippocampal pyramidal neurons

DOI ID

10.1126/science.1112014; 10.1101/gr.2596504; 10.1073/pnas.0307231101

RefSeq

NP_795916.1; XP_006540619.1; XP_006540620.1; XP_006540621.1; XP_006540622.1; XP_006540623.1

Feature